Cellular RNA levels are determined by transcription and decay rates, which are fundamental in understanding gene expression regulation. Measurement of these two parameters is usually performed...
Read More »Total RNA-seq reveals pharmacological effects on specific stages of mRNA synthesis
Pharmacological perturbation is a powerful tool for understanding mRNA synthesis, but identification of the specific steps of this multi-step process that are targeted by small molecules remains challenging. Here researchers from Harvard Medical School applied strand-specific total RNA sequencing (RNA-seq) ...
Read More »Power analysis at the isoform level
RNA-Sequencing (RNA-Seq) has become a routine technology for investigating gene expression differences in comparative transcriptomic studies. Differential expression (DE) analysis of the isoforms of genes is just emerging now that expression (read counts) can be estimated with higher accuracy at ...
Read More »Fast Read Stitcher – an annotation agnostic algorithm for detecting nascent RNA transcripts in global nuclear run-on sequencing (GRO-seq)
Researchers at the University of Colorado, Boulder have developed a fast and simple algorithm to detect nascent RNA transcription in global nuclear run-on sequencing (GRO-seq). GRO-seq is a relatively new protocol that captures nascent transcripts from actively engaged polymerase, providing a ...
Read More »mNET-Seq – snapshots of transcription
Transcription is a highly dynamic process. Consequently, researchers at the University of Oxford have developed native elongating transcript sequencing technology for mammalian chromatin (mNET-seq), which generates single-nucleotide resolution, nascent transcription profiles. Nascent RNA was detected in the active site of ...
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