MapReduce based K-mer clustering as the first step of de novo transcriptome assembly

November 7, 2017 Leave a comment 4,994 Views

De novo transcriptome assembly is an important technique for understanding gene expression in non-model organisms. Many de novo assemblers using the de Bruijn graph of a set of the RNA sequences rely on in-memory representation of this graph. However, current ...

Upcoming Webinar – De novo transcriptome assembly with RNA-Seq data

April 10, 2014 Leave a comment 5,876 Views

Date: Thursday, April 17th Time: 11AM PST · 2PM EST Duration: 45 minutes Title: De novo transcriptome assembly with RNA-seq data: Using the Trinity pipeline to delineate the status of Millepora species in the Caribbean Sea The Trinity pipeline, developed ...

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Tag Archives: Trinity pipeline

MapReduce based K-mer clustering as the first step of de novo transcriptome assembly

Upcoming Webinar – De novo transcriptome assembly with RNA-Seq data

Unraveling the secrets of nerve regeneration: insights from RNA sequencing

New pan-cancer single-cell T cell atlas reveals new details of tumor microenvironment

scSemiAAE – a semi-supervised clustering model for single-cell RNA-seq data

Avidity Sequencing – high accuracy with low reagent consumption

scMEB – a fast and clustering-independent method for detecting differentially expressed genes in single-cell RNA-seq data

Researchers weave deeper understanding of diverse ancestry and gene expression

ExpressAnalyst – a unified platform for RNA-sequencing analysis in non-model species