We are seeking to recruit a new member to our team at the University of Cambridge to contribute to the FlyBase Drosophila database. If you are looking for a fulfilling, fly-related career away from the bench, and enjoy the challenge of organizing complex...
Read More »Application of single-cell RNA sequencing methodologies in understanding haematopoiesis and immunology
The blood and immune system are characterised by utmost diversity in its cellular components. This heterogeneity can solely be resolved with the application of single-cell technologies that enable precise...
Read More »Developments in toxicogenomics: understanding and predicting compound-induced toxicity from RNA-Seq data
The toxicogenomics field aims to understand and predict toxicity by using ‘omics’ data in order to study systems-level responses to compound treatments. In recent years there has been a rapid increase in publicly available toxicological and ‘omics’ data, particularly gene ...
Read More »Using single-cell genomics to understand developmental processes and cell fate decisions
High-throughput -omics techniques have revolutionised biology, allowing for thorough and unbiased characterisation of the molecular states of biological systems. However, cellular decision-making is inherently a unicellular process to which “bulk” -omics techniques are poorly suited, as they capture ensemble averages ...
Read More »The Arabidopsis thaliana small RNA locus map
Based on 98 public and internal small RNA high throughput sequencing libraries, University of Cambridge researchers mapped small RNAs to the genome of the model organism Arabidopsis...
Read More »Detecting mosaic autosomal aneuploidies from single-cell RNA-seq data
Aneuploidies are copy number variants that affect entire chromosomes. They are seen commonly in cancer, embryonic stem cells, human embryos, and in various trisomic diseases. Aneuploidies frequently affect only a subset of cells in a sample...
Read More »RNA-Seq reveals conservation of function in the yolk sac
The yolk sac is phylogenetically the oldest of the extraembryonic membranes. The human embryo retains a yolk sac, which goes through primary and secondary phases of development, but its importance is controversial. Although it is known to synthesize proteins, its ...
Read More »Researchers use single-cell sequencing to understand how cells age
Researchers from the European Bioinformatics Institute (EMBL-EBI), University of Cambridge, the Wellcome Trust Sanger Institute and the Cancer Research UK-Cambridge Institute (CRUK-CI) have shed light on a long-standing debate about why the immune system weakens with age. Their findings, published ...
Read More »SeqPlots – Interactive software for exploratory data analyses, pattern discovery and visualization in genomics
Experiments involving high-throughput sequencing are widely used for analyses of chromatin function and gene expression. Common examples are the use of chromatin immunoprecipitation for the analysis of chromatin modifications or factor binding, enzymatic digestions for chromatin structure assays, and RNA ...
Read More »rG4-seq – a new method for RNA G-quadruplex (rG4) transcriptome profiling
Researchers from the University of Cambridge introduce RNA G-quadruplex sequencing (rG4-seq), a transcriptome-wide RNA G-quadruplex (rG4) profiling method that couples rG4-mediated reverse transcriptase stalling with next-generation sequencing. Using rG4-seq on polyadenylated-enriched HeLa RNA, the researchers generated a global in vitro ...
Read More »