The immune system varies in cell types, states, and locations. The complex networks, interactions, and responses of immune cells produce diverse cellular ecosystems composed of multiple cell types, accompanied by genetic diversity in antigen receptors. Within this ecosystem, innate and ...
Read More »Computational approaches for interpreting scRNA-seq data
The recent developments in high throughput single-cell RNA sequencing technology (scRNA-seq) have enabled the generation of vast amounts of transcriptomic data at cellular resolution. With these advances come new modes of data analysis, building on high-dimensional data mining techniques. Here, ...
Read More »Analyzing single-cell RNA data in pre-malignant tumors
An interview with Dr Martin Hemberg, Wellcome Trust Sanger Institute, conducted by April Cashin-Garbutt, MA (Cantab) What is single-cell RNA sequencing and how can it help define cell types? RNA sequencing is basically the isolation of RNA from cells and ...
Read More »Olfactory Sensory Neuron Diversity Measured By RNA-Seq
The mouse olfactory sensory neuron (OSN) repertoire is composed of 10 million cells and each expresses one olfactory receptor (OR) gene from a pool of over 1000. Thus, the nose is sub-stratified into more than a thousand OSN subtypes. Smells ...
Read More »Researchers use single-cell sequencing to understand how cells age
Researchers from the European Bioinformatics Institute (EMBL-EBI), University of Cambridge, the Wellcome Trust Sanger Institute and the Cancer Research UK-Cambridge Institute (CRUK-CI) have shed light on a long-standing debate about why the immune system weakens with age. Their findings, published ...
Read More »Single Cell Consensus Clustering (SC3) tool is more accurate and robust than existing methods
Wellcome Trust Sanger Institute scientists and their collaborators have developed a new analysis tool that was able to show, for the first time, which genes were expressed by individual cells in different genetic versions of a benign blood cancer. Single ...
Read More »Single-cell RNA-Seq uncovers secrets of immune system’s response to malaria
Scientists have revealed for the first time how immature mouse immune cells, called T cells, choose which type of skills they will develop to fight malaria infection. Reported today (3 March) in Science Immunology, researchers from the Wellcome Trust Sanger ...
Read More »Power analysis of single-cell RNA-sequencing experiments
Single-cell RNA sequencing (scRNA-seq) has become an established and powerful method to investigate transcriptomic cell-to-cell variation, thereby revealing new cell types and providing insights into developmental processes and transcriptional stochasticity. A key question is how the variety of available protocols ...
Read More »First example of using single-cell RNA sequencing to find a therapeutic target
A new therapeutic target for inflammatory diseases such as asthma and autoimmune disorders has been identified by scientists at the Wellcome Trust Sanger Institute. Published in Nature today, the researchers found that the PD-1 protein is a marker for developing ...
Read More »Power Analysis of Single Cell RNA Sequencing Experiments
High-throughput single cell RNA sequencing (scRNA-seq) has become an established and powerful method to investigate transcriptomic cell-to-cell variation, and has revealed new cell types, and new insights into developmental process and stochasticity in gene expression. There are now several published ...
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