Tutorial – RNA-seq differential expression & pathway analysis with Sailfish, DESeq2, GAGE, and Pathview in Expression and Quantification, Pathway Analysis December 10, 2015 13,580 Views DESeq2 differential expression GAGE Pathview pathway analysis Sailfish 2015-12-10 RNA-Seq Blog tweet
This is also described in a blog post here:
http://www.gettinggeneticsdone.com/2015/12/tutorial-rna-seq-differential.html