Upcoming Webinar – Building a Bulk RNA-Seq Pipeline in Code Ocean’s New Automated Nextflow Pipeline Tool

Your computational research is complex enough. Isn’t there a way to make the process simpler?

Yes, there is! With the Code Ocean automated pipeline tool, you can connect multiple coding modules (Compute Capsules) on the Code Ocean platform in a drag-and-drop interface that any collaborator can use. No code required!

Straight from the Code Ocean digital lab of open, exportable, reproducible, and interoperable science, pipelines enable you to simplify creating and sharing complex workflows for your organization.

To learn how, join our webinar on Thursday, August 25 at 12:00 p.m. ET. Computational scientists, engineers, data scientists, and IT—everyone involved in computational research is encouraged to attend.

Host Frank Zappulla, Head of Scientific Computing, will demonstrate how you can:

  • Seamlessly swap modules or adjust parameters within individual Capsules at any step a different methodology is needed.
  • Automatically generate Nextflow scripts for each pipeline, making external sharing easy.
  • Implement an RNAseq workflow in a Code Ocean pipeline, from raw reads to counts matrix using bioinformatics tools FastQC, Cutadapt, Trim Galore, and STAR.
  • Make complex analysis easy to organize, configure, and adjust.

The Speaker

Frank Zappulla
Head of Scientific Computing, Code Ocean – Frank has an extensive background in biology and is an expert in workflows, pipelines, containerization, and cloud computing.


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