Lucca LE, Axisa PP, Lu B, Harnett B, Jessel S, Zhang L, Raddassi K, Zhang L, Olino K, Clune J, Singer M, Kluger HM, Hafler DA. (2021) Circulating clonally expanded T cells reflect functions of tumor-infiltrating T cells. J Exp Med 218(4):e20200921. [abstract]
Research in the fight against advanced melanoma
According to a new study led by Yale Cancer Center and Department of Neurology researchers, a simple blood draw may be the first step in helping to discover tumor reactive immune or T cells to treat advanced melanoma, a deadly form of skin cancer. The findings were published today in the Journal of Experimental Medicine.
In this study, researchers looked for immune cells in the blood that recirculate between blood and tumor, exploiting an immune cell population important for tumor rejection. They applied 10X single-cell RNA sequencing, a technique that delivers information about the genes active in thousands of individual cells, as well as the identity of the T cell receptor of each cell, to analyze blood and tumor samples from patients with metastatic melanoma. These data generated revealed two main findings: by matching T cells across blood and tumor based on the T cell receptor identity, scientists were able to identify a group of circulating T cells with sister cells in the tumor. While it has not been possible to establish if these cells are precursors to the ones that infiltrate the tumor, or are coming back from the tumor, researchers did find that these circulating T cells can provide insight on the T cells in the tumor. Also, researchers noticed that among the T cells found in the tumor, the ones which displayed the strongest anti-tumor functions all had sister cells in the blood, while the least functional T cells were confined to the tumor. These results indicate that the T cells that are most active in the fight against the tumor are recirculating between blood and tumor.
Source – Yale School of Medicine
Lucca LE, Axisa PP, Lu B, Harnett B, Jessel S, Zhang L, Raddassi K, Zhang L, Olino K, Clune J, Singer M, Kluger HM, Hafler DA. (2021) Circulating clonally expanded T cells reflect functions of tumor-infiltrating T cells. J Exp Med 218(4):e20200921. [abstract]
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Research in the fight against advanced melanoma
According to a new study led by Yale Cancer Center and Department of Neurology researchers, a simple blood draw may be the first step in helping to discover tumor reactive immune or T cells to treat advanced melanoma, a deadly form of skin cancer. The findings were published today in the Journal of Experimental Medicine.
In this study, researchers looked for immune cells in the blood that recirculate between blood and tumor, exploiting an immune cell population important for tumor rejection. They applied 10X single-cell RNA sequencing, a technique that delivers information about the genes active in thousands of individual cells, as well as the identity of the T cell receptor of each cell, to analyze blood and tumor samples from patients with metastatic melanoma. These data generated revealed two main findings: by matching T cells across blood and tumor based on the T cell receptor identity, scientists were able to identify a group of circulating T cells with sister cells in the tumor. While it has not been possible to establish if these cells are precursors to the ones that infiltrate the tumor, or are coming back from the tumor, researchers did find that these circulating T cells can provide insight on the T cells in the tumor. Also, researchers noticed that among the T cells found in the tumor, the ones which displayed the strongest anti-tumor functions all had sister cells in the blood, while the least functional T cells were confined to the tumor. These results indicate that the T cells that are most active in the fight against the tumor are recirculating between blood and tumor.
Source – Yale School of Medicine
Lucca LE, Axisa PP, Lu B, Harnett B, Jessel S, Zhang L, Raddassi K, Zhang L, Olino K, Clune J, Singer M, Kluger HM, Hafler DA. (2021) Circulating clonally expanded T cells reflect functions of tumor-infiltrating T cells. J Exp Med 218(4):e20200921. [abstract]
Related Posts
Benchmarking RNA sequencing for more accurate alternative splicing analysis
RNA Sequencing identifies new tick-borne virus that causes flu-like illness
Small RNA sequencing reveals regulatory roles for sdRNAs in acute myeloid leukemia
POND-seq enables non-destructive RNA sequencing in living cells
Worm’s radical transformation shows metamorphosis can change the functions of cells
New method allows scientists to follow gene activity over time in the same cells
Single-cell and single-embryo RNA sequencing
RNA sequencing reveals functional chimeric mRNAs in mammalian immunity
Deep learning improves microRNA target prediction from sequence
Atlas of the brain’s striatum could guide researchers to new drug treatments
scLS – a computationally efficient differentially expressed gene detection algorithm
Spatial mapping of RNA turnover kinetics in the mouse brain
Immune cells offer insights on billion-dollar virus
SPIDER improves spatial transcriptomics data using single-cell RNA sequencing
Ultrafast and reference-free sequence discovery in single-cell data
ARCADIA combines RNA sequencing and spatial proteomics to reveal how tissue location shapes cell behavior
An end-to-end computational framework for “Record-seq” transcriptional recording data
A functionally integrated cross-tissue alternative splicing program during short-term calorie restriction
ExoShorkie – predicting RNA-seq coverage of exogenous genomes in yeast by transfer learning
Dietary oxidized plant sterol shifts macrophage state to fuel aortic inflammation
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