Yale scientists identify a gene that can repair congenital heart defects

A genetic disorder in PRDM6 causes patent ductus arteriosus (PDA), a congenital heart defect common in premature infants — suggesting a potential target for the treatment of congenital heart diseases.

Each year 3,000 newborns in the United States are diagnosed with PDA. Infants who are born premature are at greater risk for PDAs. The ductus arteriosus — a temporary blood vessel that connects the aorta and the pulmonary artery — allows blood to flow directly from the heart to the aorta during embryonic development. The vessel normally closes after the birth when smooth muscle cells contract.

“The disease is caused by a defect in a region of brain that is called the neural crest. This part of the brain appears transiently and is important because cells in this region behave like stem cells and contribute to the skull, bone, and cartilage of the face and most importantly the heart,” said Arya Mani, MD, the study’s senior author and a professor of medicine and genetics at the Yale School of Medicine.

The study appears in the journal JCI Insight.

The Mani laboratory in the Yale Cardiovascular Research Center analyzed gene expression data in mice. The researcher team focused on PRDM6, an epigenetic modifier which regulates gene expression. Using RNA-sequencing, Mani and colleagues in the Department of Medicine and Genetics discovered that PRDM6 gene regulates neural crest cell (NCC) differentiation and migration.

Cardiac NCCs (CNCCs) are essential for the cardiovascular development of an embryo. These migratory, multipotent cells are part of a network that produces melanocytes, neurons, cartilage, and connective tissue in humans.

To test whether decreased PRDM6 was associated with impaired cardiac NCC differentiation, the authors used an in vivo imaging technique called fate mapping. Smooth muscle cells and NCCs were marked with a colored dye and monitored throughout development. This allowed the research team to study cell behavior and genetic characteristics in the developing embryos. The technique demonstrated that decreased PRDM6 expression impaired their migration and differentiation to smooth muscle cells. Using single cell RNA sequencing they were able to show that the upregulation of CNCC specification gene, Wnt1 is causing the cardiac defectThe increased levels resulted in impaired migration, which could be reversed by inhibiting Wnt1.

Single cell RNA-seq of the cardiac neural crest region 
rna-seq

(A) Schematic of neural crest segments shown in different colors (top). The segment excised for single cell RNA-seq of CNCC of E9.5 embryo(bottom). (B) PHATE embeddings of Wnt1 specific KO Prdm6 mice and the corresponding littermates. (C) t-SNE plots of selected clusters of Wnt1 specific KO Prdm6 mice and the corresponding littermates generated by Partek flow. Each dot represents a cell (D) the t-SNE plots displaying the expression levels of Prdm6 in each cluster represented by dot sizes. The insets represent the magnification of preEMT (blue), and cardiac muscle lineages (yellow) clusters marked by lines (n=3 per group). 

The authors suggest that their findings can be applied to other patients with congenital heart disease caused by epigenetic dysregulation, such as those caused by alcohol or folate-deficiency during pregnancy and possibly bring scientists closer to addressing an unmet need — restoring function to damaged cardiac tissue for millions of patients with cardiovascular disease.

“We gained insight into how environment, such as drug toxicity, or lack of vitamins may cause disease. In a sense, we have insight not only to how disease happens when PRDM6 is deficient, but how many congenital heart diseases occur and can be prevented or cured either by manipulating Wnt1 or by supplementation of nutrients and vitamins that are necessary in mothers and avoiding alcohol or drugs that can impair epigenetic regulation,” said Mani.

SourceYale University

Hong L, Li N, Gasque V, Mehta S, Ye L, Wu Y, Li J, Gewies A, Ruland J, Hirschi KK, Eichmann A, Hendry C, van Dijk D, Mani A. (2022) Prdm6 controls heart development by regulating neural crest cell differentiation and migration. JCI Insight  [Epub ahead of print]. [abstract]

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